Description
tool that takes either fragmented metagenomic data or longer sequences as input and predicts and delivers full-length antiobiotic resistance genes as output.
Input
uncompressed fasta file or paired-end fastq files containing either genomes or longer contigs as nucleotide or protein sequences (fasta) or fragmented metagenomic reads (fastq)
*.{fasta}
Output
parts of the contigs that passed the final classification step that aligned with the HMM, as amino acid sequences
*.{fasta}
sequences that passed the final classification step, but only the parts that where predicted by the HMM to be part of the gene
*.{fasta}
sequences from filtered.fasta, translated in the same frame as the gene is predicted to be located
*.{fasta}
All quality controlled retrieved fragments that were classified as positive, together with its read-pair, gathered in two files
*.{fastq}