Description

Alignment-free computation of average nucleotide Identity (ANI)

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

query (file)

Fasta file(s) to be queried

*.fasta

reference (file)

Fasta file(s) to be used as reference for the query

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

ani (file)

Results of the query

*.ani.txt

versions (file)

File containing software versions

versions.yml

Tools

fastani
Apache-2.0

FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).