Alignment-free computation of Average Nucleotide Identity (ANI)
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
query
:file
Fasta file to be used as the query. If provided, ql will be ignored.
*.{fasta,fna,fa}
meta2
Groovy Map containing sample information for the reference
reference
Fasta file to be used as the reference. If provided, rl will be ignored.
ql
File containing a list of query fasta paths. query input takes precedence over this list if both are provided.
*.txt
rl
File containing a list of reference fasta paths. reference input takes precedence over this list if both are provided.
ani
ANI results file
visual
*.visual
FastANI visualization output
matrix
*.matrix
ANI matrix output
versions_fastani
${task.process}
:string
The name of the process
fastani
The name of the tool
fastANI --version 2>&1 | head -1 | sed "s/version\ //"
:eval
The expression to obtain the version of the tool
versions
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
