Description

“Python C-extension for a simple validator for fasta files. The module emits the validated file or an error log upon validation failure.”

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing file information
e.g. [ id:‘test’ ]

fasta (file)

Input fasta file

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing file information
e.g. [ id:‘test’ ]

success_log (file)

Log file for successful validation

*.success.log

error_log (file)

Log file for failed validation

*.error.log

versions (file)

File containing software versions

versions.yml
maintainer
Github user gallvp
get in touch
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Tools

fasta_validate
MIT

"Python C-extension for a simple C code to validate a fasta file. It only checks a few things, and by default only sets its response via the return code, so you will need to check that!"

github.com/linsalrob/py_fasta_validator 10.5281/zenodo.5002710