Quickly compute statistics over a fasta file in windows.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
FASTA file
*.{fa,fasta,fna}
versions
File containing software versions
versions.yml
freq
TSV file with frequencies and statistics
*.{tsv}
mononuc
TSV file with mononucleotide counts
dinuc
TSV file with dinucleotide counts
trinuc
TSV file with trinucleotide counts
tetranuc
TSV file with tetranucleotide counts
fasta_windows is a tool written for Darwin Tree of Life chromosomal level genome assemblies. The executable takes a fasta formatted file and calculates some statistics of interest in windows