A fast K-mer counter for high-fidelity shotgun datasets
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FASTA, FASTQ, SAM, BAM or CRAM files. All must be of the same type.
hist
*.hist
Histogram of k-mers
ktab
*.ktab*
A sorted table of all canonical k‑mers along with their counts.
prof
*.{prof,pidx}*
A k‑mer count profile of each sequence in the input data set.
versions_fastk
${task.process}
:string
Name of the process
fastk
Name of the tool
1.2
The expression to obtain the version of the tool
log
*.log
FastK command stdout/stderr log file
versions
