A fast K-mer counter for high-fidelity shotgun datasets
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FASTA, FASTQ, SAM, BAM or CRAM files. All must be of the same type.
hist{:bash}
*.hist{:bash}
Histogram of k-mers
*.hist
ktab{:bash}
*.ktab*{:bash}
A sorted table of all canonical k‑mers along with their counts.
*.ktab*
prof{:bash}
*.{prof,pidx}*{:bash}
A k‑mer count profile of each sequence in the input data set.
*.{prof,pidx}*
versions_fastk{:bash}
${task.process}{:bash}
:string
Name of the process
fastk{:bash}
Name of the tool
1.2{:bash}
The expression to obtain the version of the tool
versions{:bash}
