A fast K-mer counter for high-fidelity shotgun datasets
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
hist
*.hist
Histogram of k-mers
ktab
*.ktab*
A sorted table of all canonical k‑mers along with their counts.
*.ktab
prof
*.{prof,pidx}*
A k‑mer count profile of each sequence in the input data set.
*.prof
versions
versions.yml
File containing software versions
