A fast K-mer counter for high-fidelity shotgun datasets
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
hist{:bash}
*.hist{:bash}
Histogram of k-mers
*.hist
ktab{:bash}
*.ktab*{:bash}
A sorted table of all canonical k‑mers along with their counts.
*.ktab
prof{:bash}
*.{prof,pidx}*{:bash}
A k‑mer count profile of each sequence in the input data set.
*.prof
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
