Description

A fast K-mer counter for high-fidelity shotgun datasets

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

histogram{:bash}

:file

A FastK histogram file

*.hist

Output

name:type
description
pattern

hist{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.hist.txt{:bash}

:file

A formatted histogram file

*.hist

versions_fastk{:bash}

${task.process}{:bash}

:string

Name of the process

fastk{:bash}

:string

Name of the tool

1.2{:bash}

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

Name of the process

fastk{:bash}

:string

Name of the tool

1.2{:bash}

:string

The expression to obtain the version of the tool

Tools

fastk

A fast K-mer counter for high-fidelity shotgun datasets