Description

A fast K-mer counter for high-fidelity shotgun datasets

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

histogram (file)

A FastK histogram file

*.hist

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

hist (file)

A formatted histogram file

*.hist
included in
genomeassembler
maintainer
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

fastk
https://github.com/thegenemyers/FASTK/blob/master/LICENSE

A fast K-mer counter for high-fidelity shotgun datasets

github.com/thegenemyers/FASTK https://github.com/thegenemyers/FASTK