modules/fastk_histex

A fast K-mer counter for high-fidelity shotgun datasets

k-merhistogramfastk

https://github.com/nf-core/modules/[...]/modules/nf-core/fastk/histex

Description

A fast K-mer counter for high-fidelity shotgun datasets

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`histogram`
`:file`

A FastK histogram file

*.hist

Output

name:type

description

pattern

`hist`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.hist.txt`
`:file`

A formatted histogram file

*.hist

`versions_fastk`

`${task.process}`
`:string`

Name of the process

`fastk`
`:string`

Name of the tool

`1.2`
`:string`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

Name of the process

`fastk`
`:string`

Name of the tool

`1.2`
`:string`

The expression to obtain the version of the tool

Tools

fastk

A fast K-mer counter for high-fidelity shotgun datasets

github.com/thegenemyers/FASTK https://github.com/thegenemyers/FASTK

modules/fastk_histex

Description

Input

`meta`
`:map`

`histogram`
`:file`

Output

`hist`

`meta`
`:map`

`*.hist.txt`
`:file`

`versions_fastk`

`${task.process}`
`:string`

`fastk`
`:string`

`1.2`
`:string`

Topics

`versions`

`${task.process}`
`:string`

`fastk`
`:string`

`1.2`
`:string`

Tools

fastk

maintainer

get in touch

modules/fastk_histex

Description

Input

meta :map

histogram :file

Output

hist

meta :map

*.hist.txt :file

versions_fastk

${task.process} :string

fastk :string

1.2 :string

Topics

versions

${task.process} :string

fastk :string

1.2 :string

Tools

fastk

maintainer

get in touch

`meta`
`:map`

`histogram`
`:file`

`hist`

`meta`
`:map`

`*.hist.txt`
`:file`

`versions_fastk`

`${task.process}`
`:string`

`fastk`
`:string`

`1.2`
`:string`

`versions`

`${task.process}`
`:string`

`fastk`
`:string`

`1.2`
`:string`