Description

A fast K-mer counter for high-fidelity shotgun datasets

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

histogram (file)

A FastK histogram file

*.hist

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

hist (file)

A formatted histogram file

*.hist
included in
genomeassembler
maintainer
Github user mahesh-panchal
get in touch
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Tools

fastk

A fast K-mer counter for high-fidelity shotgun datasets

github.com/thegenemyers/FASTK https://github.com/thegenemyers/FASTK