Description

A tool to merge FastK histograms

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastk_hist (file)

A histogram files from the program FastK

*.hist

fastk_ktab (file)

Histogram ktab files from the program FastK (option -t)

*.ktab*

fastk_prof (file)

Histogram profile files from the program FastK (option -p)

*.{prof,pidx}*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fastk_hist (file)

A histogram files from the program FastK

*.hist

fastk_ktab (file)

Histogram ktab files from the program FastK (option -t)

*.ktab*

fastk_prof (file)

Histogram profile files from the program FastK (option -p)

*.{prof,pidx}*
included in
genomeassembler
maintainer
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

fastk
https://github.com/thegenemyers/FASTK/blob/master/LICENSE

A fast K-mer counter for high-fidelity shotgun datasets

github.com/thegenemyers/FASTK https://github.com/thegenemyers/FASTK