Description

A tool to merge FastK histograms

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

hist{:bash}

:file

FastK histogram file

ktab{:bash}

:file

FastK ktab file

prof{:bash}

:file

FastK prof file

Output

name:type
description
pattern

hist{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.hist{:bash}

:file

FastK histogram file

*.hist

ktab{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.ktab*{:bash}

:file

FastK ktab file

*.ktab

prof{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{prof,pidx}*{:bash}

:file

FastK prof file

*.{prof,pidx}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

fastk

A fast K-mer counter for high-fidelity shotgun datasets