A Groovy map containing sample information,
e.g. [ id: “test” ]
infile
:file
MSA or distance matrix in Phylip format
*
initial_tree
:file
Initial tree
Output
name:type
description
pattern
nwk
meta
:map
A Groovy map containing sample information
*.nwk
:file
Final phylogeny in Newick format
*.nwk
stats
meta
:map
A Groovy map containing sample information
*_stat.txt
:file
A text file with the statistics of the phylogeny
*_stat.txt
matrix
meta
:map
A Groovy map containing sample information
*.matrix.phy
:file
Optional; the distance matrix in Phylip matrix format; it is generated if the -O option is passed in ext.args, although the provided file name will be overwritten
*.matrix.phy
bootstrap
meta
:map
A Groovy map containing sample information
*.bootstrap
:file
A file containing all bootstrap trees in Newick format; it is generated if the -B option is passed in ext.args (and bootstrap is used), although the provided file name will be overwritten
*.bootstrap
versions_fastme
${task.process}
:string
The name of the process
fastme
:string
The name of the tool
fastme --version |& sed '1!d ; s/FastME //'
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
fastme
:string
The name of the tool
fastme --version |& sed '1!d ; s/FastME //'
:eval
The expression to obtain the version of the tool
Tools
fastme
GPL v3
A comprehensive, accurate and fast distance-based phylogeny inference program.
