Description

FASTQ summary statistics in JSON format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

FASTQ file

*.{fastq.gz,fq.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

json (file)

JSON formatted file of summary statistics

*.json

Tools

fastqscan
MIT

FASTQ summary statistics in JSON format