Description

FASTQ summary statistics in JSON format

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads:file

FASTQ file

*.{fastq.gz,fq.gz}

Output

name:type
description
pattern

json

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.json:file

JSON formatted file of summary statistics

*.json

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fastqscan
MIT

FASTQ summary statistics in JSON format