Description

FASTQ summary statistics in JSON format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads{:bash}

:file

FASTQ file

*.{fastq.gz,fq.gz}

Output

name:type
description
pattern

json{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.json{:bash}

:file

JSON formatted file of summary statistics

*.json

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

fastqscan
MIT

FASTQ summary statistics in JSON format