Build fastq screen config file from bowtie index files
Input
name:type
description
pattern
genome_names
:string
List of names for each index
indexes
:directory
Bowtie2 genome directories containing index files
Output
name:type
description
pattern
database
FastQ_Screen_Genomes
:directory
fastq screen database folder containing config file and index folders
FastQ_Screen_Genomes
versions_fastqscreen
${task.process}
:string
The name of the process
fastqscreen
:string
The name of the tool
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
fastqscreen
:string
The name of the tool
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"
:eval
The expression to obtain the version of the tool
Tools
fastqscreen
GPL-3.0-or-later
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
