Description

Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.

Input

name:type
description
pattern

alignment:file

A FASTA format multiple sequence alignment file

*.{fasta,fas,fa,mfa}

Output

name:type
description
pattern

phylogeny

*.tre:file

A phylogeny in Newick format

*.{tre}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fasttree
GPL v2

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences