Description

Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.

Input

Name (Type)
Description
Pattern

alignment (file)

A FASTA format multiple sequence alignment file

*.{fasta,fas,fa,mfa}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

phylogeny (file)

A phylogeny in Newick format

*.{tre}
author
Github user aunderwo
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Tools

fasttree
GPL v2

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

http://www.microbesonline.org/fasttree http://www.microbesonline.org/fasttree/#Usage