Description

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

Input

name:type
description
pattern

ids:list

List of supported database ids e.g. SRA / GEO / ENA

Output

name:type
description
pattern

json

*.json:file

JSON file containing metadata for ids

*.{json}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ffq
MIT

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

github.com/pachterlab/ffq github.com/pachterlab/ffq#usage https://github.com/pachterlab/ffq 10.1101/2022.05.18.492548
maintainer
Github user drpatelh
get in touch
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