modules/ffq

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

SRAENAGEOmetadatafetchpublicdatabases

https://github.com/nf-core/modules/[...]/modules/nf-core/ffq

Description

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

Input

name:type

description

pattern

`ids{:bash}`
`:list`

List of supported database ids e.g. SRA / GEO / ENA

Output

name:type

description

pattern

`json{:bash}`

`*.json{:bash}`
`:file`

JSON file containing metadata for ids

*.{json}

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

ffq
MIT

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

github.com/pachterlab/ffq github.com/pachterlab/ffq#usage https://github.com/pachterlab/ffq 10.1101/2022.05.18.492548

modules/ffq

Description

Input

`ids{:bash}`
`:list`

Output

`json{:bash}`

`*.json{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

ffq
MIT

maintainer

get in touch

modules/ffq

Description

Input

ids{:bash}:list

Output

json{:bash}

*.json{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

ffq MIT

maintainer

get in touch

`ids{:bash}`
`:list`

`json{:bash}`

`*.json{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

ffq
MIT