Description

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.

Input

name:type
description
pattern

ids

:list

List of supported database ids e.g. SRA / GEO / ENA

Output

name:type
description
pattern

json

*.json

:file

JSON file containing metadata for ids

*.{json}

versions_ffq

${task.process}

:string

The name of the process

ffq

:string

The name of the tool

ffq --help 2>&1 | sed 's/^.*ffq //; s/: A command.*\$//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

ffq

:string

The name of the tool

ffq --help 2>&1 | sed 's/^.*ffq //; s/: A command.*\$//'

:eval

The expression to obtain the version of the tool

Tools

ffq
MIT

A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.