Calls consensus sequences from reads with the same unique molecular tag.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
grouped_bam:file
The input SAM or BAM file, grouped by UMIs
*.{bam,sam}
min_reads:integer
Minimum number of original reads to build each consensus read.
min_baseq:integer
Ignore bases in raw reads that have Q below this value.
bam
*.bam:file
Output SAM or BAM file to write consensus reads.
versions
versions.yml:file
File containing software versions
versions.yml
Tools for working with genomic and high throughput sequencing data.
