Copies the UMI at the end of a bam files read name to the RX tag.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
bam{:bash}
:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
bai{:bash}
Index for bam file
*.{bai}
*.bam{:bash}
Sorted BAM file
*.{bam}
*.bai{:bash}
versions_fgbio{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
fgbio{:bash}
The tool name
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of tools for working with genomic and high throughput sequencing data, including UMIs
