Copies the UMI at the end of a bam files read name to the RX tag.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
bam
:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
bai
Index for bam file
*.{bai}
*.bam
Sorted BAM file
*.{bam}
*.bai
versions_fgbio
${task.process}
:string
The process the versions were collected from
fgbio
The tool name
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
:eval
The expression to obtain the version of the tool
versions
A set of tools for working with genomic and high throughput sequencing data, including UMIs
