Description

Sorts a SAM or BAM file. Several sort orders are available, including coordinate, queryname, random, and randomquery.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

, collapse
]

bam (file)

The input SAM or BAM file to be sorted.

*.{bam,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

Output SAM or BAM file.

*.{bam,sam}

versions (file)

File containing software versions

versions.yml
author
Github user sruthipsuresh
get in touch
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Tools

fgbio
MIT

Tools for working with genomic and high throughput sequencing data.

github.com/fulcrumgenomics/fgbio http://fulcrumgenomics.github.io/fgbio