Filtlong filters long reads based on quality measures or short read data.
Input
name:type
description
pattern
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
shortreads:file
fastq file
*.{fq,fastq,fq.gz,fastq.gz}
longreads:file
fastq file
*.{fq,fastq,fq.gz,fastq.gz}
Output
name:type
description
pattern
reads
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.fastq.gz:file
Filtered (compressed) fastq file
*.fastq.gz
log
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
*.log:file
Standard error logging file containing summary statistics
*.log
versions
versions.yml:file
File containing software versions
versions.yml
Tools
filtlong
GPL v3
Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
