Perform merging of mate paired-end sequencing reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FastQ files of size 2; i.e., paired-end data.
*fastq.gz
merged
${prefix}.extendedFrags.fastq.gz
The merged fastq reads
.extendedFrags.fastq.gz
notcombined
${prefix}.notCombined_*.fastq.gz
Not combined reads from flash
.notCombined_*.fastq.gz
histogram
${prefix}.hist
HistogramNumeric histogram of merged read lengths.
.hist
versions_flash
${task.process}
:string
The name of the process
flash
The name of the tool
flash --version |& sed '1!d;s/^.*FLASH v//'
:eval
The expression to obtain the version of the tool
versions
Merge mates from fragments that are shorter than twice the read length
