Description

Perform merging of mate paired-end sequencing reads

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input FastQ files of size 2; i.e., paired-end data.

*fastq.gz

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

The merged fastq reads

*fastq.gz

versions (file)

File containing software versions

versions.yml

Tools

flash
GPL v3+

Merge mates from fragments that are shorter than twice the read length