Perform merging of mate paired-end sequencing reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
List of input FastQ files of size 2; i.e., paired-end data.
*fastq.gz
merged
${prefix}.extendedFrags.fastq.gz:file
The merged fastq reads
.extendedFrags.fastq.gz
notcombined
${prefix}.notCombined_*.fastq.gz:file
Not combined reads from flash
.notCombined_*.fastq.gz
histogram
${prefix}.hist:file
HistogramNumeric histogram of merged read lengths.
.hist
versions
versions.yml:file
File containing software versions
versions.yml
Merge mates from fragments that are shorter than twice the read length
