Perform merging of mate paired-end sequencing reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 2; i.e., paired-end data.
*fastq.gz
merged{:bash}
${prefix}.extendedFrags.fastq.gz{:bash}
The merged fastq reads
.extendedFrags.fastq.gz
notcombined{:bash}
${prefix}.notCombined_*.fastq.gz{:bash}
Not combined reads from flash
.notCombined_*.fastq.gz
histogram{:bash}
${prefix}.hist{:bash}
HistogramNumeric histogram of merged read lengths.
.hist
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Merge mates from fragments that are shorter than twice the read length
