De novo assembler for single molecule sequencing reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads:file
Input reads from Oxford Nanopore or PacBio data in FASTA/FASTQ format.
*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}
mode:string
Flye mode depending on the input data (source and error rate)
--pacbio-raw|--pacbio-corr|--pacbio-hifi|--nano-raw|--nano-corr|--nano-hq
fasta
*.fasta.gz:file
Assembled FASTA file
*.fasta.gz
gfa
*.gfa.gz:file
Repeat graph in gfa format
*.gfa.gz
gv
*.gv.gz:file
Repeat graph in gv format
*.gv.gz
txt
*.txt:file
Extra information and statistics about resulting contigs
*.txt
log
*.log:file
Flye log file
*.log
json
*.json:file
Flye parameters
*.json
versions
versions.yml:file
File containing software versions
versions.yml
Fast and accurate de novo assembler for single molecule sequencing reads
