Description

Efficient compression tool for protein structures

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

pdb (file)

Protein structure(s) in PDB or CIF format to compress (also works with folder input)

*.{pdb,cif}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

fcz (file)

Either single compressed protein structure (if input was file) or folder with all compressed protein structures (if input was directory)

{*_fcz,*.fcz}

versions (file)

File containing software versions

versions.yml

Tools

foldcomp
GPL v3-or-later

Foldcomp: a library and format for compressing and indexing large protein structure sets