Create a database from protein structures
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
pdb
:file
Protein structure(s) in PDB, mmCIF or mmJSON format (also works with folder input)
*.{pdb,mmcif,mmjson}
db
${prefix}
:directory
Directory containing pdb database files
*
versions_foldseek
${task.process}
:string
The name of the process
foldseek
The name of the tool
foldseek --help |& sed -n 's/.*Version: //p'
:eval
The expression to obtain the version of the tool
versions
Foldseek: fast and accurate protein structure search
