Description

Create a database from protein structures

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

pdb (file)

Protein structure(s) in PDB, mmCIF or mmJSON format (also works with folder input)

*.{pdb,mmcif,mmjson}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

db (directory)

Directory containing pdb database files

*

versions (file)

File containing software versions

versions.yml

Tools

foldseek
GPL v3

Foldseek: fast and accurate protein structure search