Search for protein structural hits against a foldseek database of protein structures
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
pdb:file
Protein structure(s) in PDB, mmCIF or mmJSON format to compare against a foldseek database (also works with folder input)
*.{pdb,mmcif,mmjson}
meta_db:map
Groovy Map containing sample information for the foldseek db e.g. [ id:'test', single_end:false ]
db:directory
foldseek database from protein structures
*
aln
${meta.id}.m8:file
Structural comparisons file output Query, Target, Identity, Alignment length, Mismatches, Gap openings, Query start, Query end, Target start, Target end, E-value, Bit score
*.{m8}
versions
versions.yml:file
File containing software versions
versions.yml
Foldseek: fast and accurate protein structure search
