Description

fq generate is a FASTQ file pair generator. It creates two reads, formatting names as described by Illumina. While generate creates “valid” FASTQ reads, the content of the files are completely random. The sequences do not align to any genome. This requires a seed (—seed) to be supplied in ext.args.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

Output

name:type
description
pattern

fastq

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fastq.gz:file

Random generated FASTQ files.

*_R[12].fastq.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.