Description

fq generate is a FASTQ file pair generator. It creates two reads, formatting names as described by Illumina. While generate creates “valid” FASTQ reads, the content of the files are completely random. The sequences do not align to any genome. This requires a seed (—seed) to be supplied in ext.args.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

Random generated FASTQ files.

*_R[12].fastq.gz

versions (file)

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.