Description

fq lint is a FASTQ file pair validator.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq{:bash}

:file

FASTQ file list

*.fastq{,.gz}

Output

name:type
description
pattern

lint{:bash}

meta{:bash}

:file

Lint output

*.fq_lint.txt

*.fq_lint.txt{:bash}

:file

Lint output

*.fq_lint.txt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.