Description

fq lint is a FASTQ file pair validator.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fastq:file

FASTQ file list

*.fastq{,.gz}

Output

name:type
description
pattern

lint

meta:file

Lint output

*.fq_lint.txt

*.fq_lint.txt:file

Lint output

*.fq_lint.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.