modules/fq_subsample

fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (—seed) to be set in ext.args.

fastqfqsubsample

https://github.com/nf-core/modules/[...]/modules/nf-core/fq/subsample

Description

fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (—seed) to be set in ext.args.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`fastq:file`

FASTQ file

*.{fq,fastq}{,.gz}

Output

name:type

description

pattern

`fastq`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.fastq.gz:file`

Randomly sampled FASTQ files.

*_R[12].fastq.gz

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.

github.com/stjude-rust-labs/fq

modules/fq_subsample

Description

Input

`meta:map`

`fastq:file`

Output

`fastq`

`meta:map`

`*.fastq.gz:file`

`versions`

`versions.yml:file`

Tools

fq
MIT

included in

maintainer

get in touch

modules/fq_subsample

Description

Input

meta:map

fastq:file

Output

fastq

meta:map

*.fastq.gz:file

versions

versions.yml:file

Tools

fq MIT

included in

maintainer

get in touch

`meta:map`

`fastq:file`

`fastq`

`meta:map`

`*.fastq.gz:file`

`versions`

`versions.yml:file`

fq
MIT