Description

fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (—seed) to be set in ext.args.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq{:bash}

:file

FASTQ file

*.{fq,fastq}{,.gz}

Output

name:type
description
pattern

fastq{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fastq.gz{:bash}

:file

Randomly sampled FASTQ files.

*_R[12].fastq.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.

github.com/stjude-rust-labs/fq
included in
lncpiperiboseqrnaseq
maintainer
Github user adamrtalbot
get in touch
Ask a question on Slack Open an issue on GitHub