Description

fq subsample outputs a subset of records from single or paired FASTQ files. This requires a seed (—seed) to be set in ext.args.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastq (file)

FASTQ file

*.{fq,fastq}{,.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fastq (file)

Randomly sampled FASTQ files.

*_R[12].fastq.gz
included in
riboseq rnaseq
maintainer
Github user adamrtalbot
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Tools

fq
MIT

fq is a library to generate and validate FASTQ file pairs.

github.com/stjude-rust-labs/fq