Demultiplex fastq files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
sample_sheet
:file
Tsv file, with two columns sample_id and barcode
*.{tsv}
fastq_folder
Directory containing fastq files that will be staged as ‘input’ folder
*
fastq_readstructure_pairs
List of lists i.e. [[, ],…]
sample_fastq
output/*.fq.gz
Demultiplexed per-sample FASTQ files
output/*R*.fastq.gz
metrics
output/demux-metrics.txt
Demultiplexing summary stats; sample_id, barcode templates, frac_templates, ratio_to_mean, ratio_to_best
most_frequent_unmatched
output/unmatched*.fq.gz
File containing unmatched fastq records
versions_fqtk
${task.process}
:string
The name of the process
fqtk
The name of the tool
fqtk --version 2>&1 | cut -d " " -f2
:eval
The expression to obtain the version of the tool
versions
A toolkit for working with FASTQ files, written in Rust.
