Demultiplex fastq files
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
sample_sheet:file
Tsv file, with two columns sample_id and barcode
*.{tsv}
fastq_folder:file
Directory containing fastq files that will be staged as ‘input’ folder
*
fastq_readstructure_pairs:map
List of lists i.e. [[, ],…]
sample_fastq
output/*.fq.gz:file
Demultiplexed per-sample FASTQ files
output/*R*.fastq.gz
metrics
output/demux-metrics.txt:file
Demultiplexing summary stats; sample_id, barcode templates, frac_templates, ratio_to_mean, ratio_to_best
output/demux-metrics.txt
most_frequent_unmatched
output/unmatched*.fq.gz:file
File containing unmatched fastq records
output/unmatched*.fq.gz
versions
versions.yml:file
File containing software versions
versions.yml
A toolkit for working with FASTQ files, written in Rust.
