Demultiplex fastq files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
sample_sheet{:bash}
:file
Tsv file, with two columns sample_id and barcode
*.{tsv}
fastq_folder{:bash}
Directory containing fastq files that will be staged as ‘input’ folder
*
fastq_readstructure_pairs{:bash}
List of lists i.e. [[, ],…]
sample_fastq{:bash}
output/*.fq.gz{:bash}
Demultiplexed per-sample FASTQ files
output/*R*.fastq.gz
metrics{:bash}
output/demux-metrics.txt{:bash}
Demultiplexing summary stats; sample_id, barcode templates, frac_templates, ratio_to_mean, ratio_to_best
output/demux-metrics.txt
most_frequent_unmatched{:bash}
output/unmatched*.fq.gz{:bash}
File containing unmatched fastq records
output/unmatched*.fq.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A toolkit for working with FASTQ files, written in Rust.
