Gene Allele Mutation Microbial Assessment
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file
*.{fa,fasta}
db{:bash}
Database in FASTA format
gamma{:bash}
*.gamma{:bash}
GAMMA file with annotated gene matches
*.{gamma}
psl{:bash}
*.psl{:bash}
PSL file with all gene matches found
*.{psl}
gff{:bash}
*.gff{:bash}
GFF file
*.{gff}
*.fasta{:bash}
multifasta file of the gene matches
*.{fasta}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Tool for Gene Allele Mutation Microbial Assessment
