type/
GangSTR is a tool for genome-wide profiling tandem repeats from short reads.
gangstrSTRbamcramvcf
Input
name:type
description
pattern
A reference set of regions to genotype in a BED-like format. The file should have following columns:
- The name of the chromosome on which the STR is located
- The start position of the STR on its chromosome
- The end position of the STR on its chromosome
- The motif length
- The repeat motif
*.bed