Classify FASTQ files against ganon database
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fastqs:file
Single or paired FASTQ files, optionally gzipped
*.{fq,fq.gz,fastq,fastq.gz}
db:file
Ganon database files from build or build-custom
*.{ibf,tax}
tre
*.tre:file
Full ganon report file
*.tre
report
*.rep:file
Plain ganon report file with only targets with match
*.rep
one
*.one:file
Information about a single (best) match of a given read after EM or LCA algorithms
*.one
all
*.all:file
Information of all matches to a given read
*.all
unc
*.unc:file
List of all reads without a hit
*.unc
log
*.log:file
Text file containing console output from ganon classify
*.log
versions
versions.yml:file
File containing software versions
versions.yml
ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently
