Classify FASTQ files against ganon database
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastqs
:file
Single or paired FASTQ files, optionally gzipped
*.{fq,fq.gz,fastq,fastq.gz}
db
Ganon database files from build or build-custom
*.{ibf,tax}
tre
*.tre
Full ganon report file
report
*.rep
Plain ganon report file with only targets with match
one
*.one
Information about a single (best) match of a given read after EM or LCA algorithms
all
*.all
Information of all matches to a given read
unc
*.unc
List of all reads without a hit
log
*.log
Text file containing console output from ganon classify
versions_ganon
${task.process}
:string
The name of the process
ganon
The name of the tool
ganon --version 2>1 | sed 's/.*ganon //g'
:eval
The expression to obtain the version of the tool
versions
ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently
