Description

Generate a ganon report file from the output of ganon classify

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

rep (file)

Input ‘repo’ files from ganon classify

*.rep

dbs (file)

Ganon database files from build or build-custom

*.{ibf,tax}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tre (file)

Output ganon report containing taxonomic profile information. Formatting of contents depends on —output-format.

*.tre
included in
taxprofiler
author
Github user jfy133
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Tools

ganon
MIT License

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

github.com/pirovc/ganon 10.1093/bioinformatics/btaa458