Generate a ganon report file from the output of ganon classify
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
rep
:file
Input ‘repo’ files from ganon classify
*.rep
db
Ganon database files from build or build-custom
*.{ibf,tax}
tre
*.tre
Output ganon report containing taxonomic profile information. Formatting of contents depends on –output-format.
versions_ganon
${task.process}
:string
The name of the process
ganon
The name of the tool
ganon --version 2>1 | sed 's/.*ganon //g'
:eval
The expression to obtain the version of the tool
versions
ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently
