Description

Generate a multi-sample report file from the output of ganon report runs

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

tre:file

A list of ‘tre’ files from ganon report

*.tre

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt:file

Output ganon table containing taxonomic profile information of multiple samples. Formatting of contents depends on —output-format.

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ganon
MIT

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

github.com/pirovc/ganon 10.1093/bioinformatics/btaa458
taxprofiler
Github user jfy133
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