Description

Generate a multi-sample report file from the output of ganon report runs

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tre (file)

A list of ‘tre’ files from ganon report

*.tre

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Output ganon table containing taxonomic profile information of multiple samples. Formatting of contents depends on —output-format.

*.txt

Tools

ganon
MIT

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently