Description

Generate a multi-sample report file from the output of ganon report runs

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tre (file)

A list of ‘tre’ files from ganon report

*.tre

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Output ganon table containing taxonomic profile information of multiple samples. Formatting of contents depends on —output-format.

*.txt
included in
taxprofiler
author
Github user jfy133
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Tools

ganon
MIT License

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

github.com/pirovc/ganon 10.1093/bioinformatics/btaa458