modules/ganon_table

Generate a multi-sample report file from the output of ganon report runs

ganonmetagenomicsprofilingtaxonomyk-merclassificationreporttable

https://github.com/nf-core/modules/[...]/modules/nf-core/ganon/table

Description

Generate a multi-sample report file from the output of ganon report runs

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`tre:file`

A list of ‘tre’ files from ganon report

*.tre

Output

name:type

description

pattern

`txt`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.txt:file`

Output ganon table containing taxonomic profile information of multiple samples. Formatting of contents depends on —output-format.

*.txt

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

ganon
MIT

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

github.com/pirovc/ganon 10.1093/bioinformatics/btaa458

modules/ganon_table

Description

Input

`meta:map`

`tre:file`

Output

`txt`

`meta:map`

`*.txt:file`

`versions`

`versions.yml:file`

Tools

ganon
MIT

included in

maintainer

get in touch

modules/ganon_table

Description

Input

meta:map

tre:file

Output

txt

meta:map

*.txt:file

versions

versions.yml:file

Tools

ganon MIT

included in

maintainer

get in touch

`meta:map`

`tre:file`

`txt`

`meta:map`

`*.txt:file`

`versions`

`versions.yml:file`

ganon
MIT