Description

This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.

Input

name:type
description
pattern

fasta:file

FASTA reference file

*.{fasta,fa}

fasta_fai:file

index of the FASTA reference file

*.fai

dict:file

Sequence dictionary of the FASTA reference file

*.dict

Output

name:type
description
pattern

str_table

*.zip:file

A zipped folder containing the STR table files

*.zip

versions

versions.yml:file

File containing software versions

versions.yml

Tools

gatk4
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.