Description

This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.

Input

Name (Type)
Description
Pattern

fasta (file)

FASTA reference file

*.{fasta,fa}

fasta_fai (file)

index of the FASTA reference file

*.fai

dict (file)

Sequence dictionary of the FASTA reference file

*.dict

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

str_table (file)

A zipped folder containing the STR table files

*.zip
maintainer
Github user nvnieuwk
get in touch
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Tools

gatk4
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/articles/4405451249819-ComposeSTRTableFile 10.1158/1538-7445.AM2017-3590