Merges adjacent DepthEvidence records
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
depth_evidence{:bash}
:file
The depth evidence file
*.rd.txt.gz
depth_evidence_index{:bash}
The index of the depth evidence file
*.rd.txt.gz.tbi
fasta{:bash}
Reference FASTA file needed when the input is a CRAM file
*.{fasta,fa}
fasta_fai{:bash}
Index of the reference FASTA file needed when the input is a CRAM file
*.fai
dict{:bash}
Sequence dictionary of the reference FASTA file needed when the input is a CRAM file
*.dict
condensed_evidence{:bash}
*.rd.txt.gz{:bash}
The condensed depth evidence
condensed_evidence_index{:bash}
*.rd.txt.gz.tbi{:bash}
versions_gatk4{:bash}
${task.process}{:bash}
:string
The name of the process
gatk4{:bash}
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Genome Analysis Toolkit (GATK4)
