Merges adjacent DepthEvidence records
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
depth_evidence
:file
The depth evidence file
*.rd.txt.gz
depth_evidence_index
The index of the depth evidence file
*.rd.txt.gz.tbi
fasta
Reference FASTA file needed when the input is a CRAM file
*.{fasta,fa}
fasta_fai
Index of the reference FASTA file needed when the input is a CRAM file
*.fai
dict
Sequence dictionary of the reference FASTA file needed when the input is a CRAM file
*.dict
condensed_evidence
The condensed depth evidence
condensed_evidence_index
versions_gatk4
${task.process}
:string
The name of the process
gatk4
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'
:eval
The expression to obtain the version of the tool
versions
Genome Analysis Toolkit (GATK4)
