modules/gatk4_createsequencedictionary

Creates a sequence dictionary for a reference sequence

createsequencedictionarydictionaryfastagatk4

https://github.com/nf-core/modules/[...]/modules/nf-core/gatk4/createsequencedictionary

Description

Creates a sequence dictionary for a reference sequence

Input

name:type

description

pattern

`meta:map`

Groovy Map containing reference information e.g. [ id:‘genome’ ]

`fasta:file`

Input fasta file

*.{fasta,fa}

Output

name:type

description

pattern

`dict`

`meta:file`

gatk dictionary file

*.{dict}

`*.dict:file`

gatk dictionary file

*.{dict}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

gatk
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/categories/360002369672s 10.1158/1538-7445.AM2017-3590

modules/gatk4_createsequencedictionary

Description

Input

meta:map

fasta:file

Output

dict

meta:file

*.dict:file

versions

versions.yml:file