Estimates the numbers of unique molecules in a sequencing library.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
fasta:file
The reference fasta file
*.fasta
fai:file
Index of reference fasta file
fasta.fai
dict:file
GATK sequence dictionary
*.dict
metrics
*.metrics:file
File containing metrics on the input files
*.{metrics}
versions
versions.yml:file
File containing software versions
versions.yml
Genome Analysis Toolkit (GATK4)
