Estimates the numbers of unique molecules in a sequencing library.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
fasta{:bash}
The reference fasta file
*.fasta
fai{:bash}
Index of reference fasta file
fasta.fai
dict{:bash}
GATK sequence dictionary
*.dict
metrics{:bash}
*.metrics{:bash}
File containing metrics on the input files
*.{metrics}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Genome Analysis Toolkit (GATK4)
