Description

Gathers scattered BQSR recalibration reports into a single file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

table (file)

File(s) containing BQSR table(s)

*.table

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

table (file)

File containing joined BQSR table

*.table

versions (file)

File containing software versions

versions.yml
included in
rnadnavar sarek
author
Github user FriederikeHanssen
get in touch
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Tools

gatk4
BSD-3-clause

Genome Analysis Toolkit (GATK4)

gatk.broadinstitute.org/hc/en-us https://github.com/broadinstitute/gatk 10.1158/1538-7445.AM2017-3590