Description

Gathers scattered BQSR recalibration reports into a single file

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

table{:bash}

:file

File(s) containing BQSR table(s)

*.table

Output

name:type
description
pattern

table{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.table{:bash}

:file

File containing joined BQSR table

*.table

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml