Description

write your description here

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pileup (file)

Pileup files from gatk4/getpileupsummaries

*.pileups.table

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

table (file)

pileup summaries table file

*.pileups.table

versions (file)

File containing software versions

versions.yml
included in
rnadnavar sarek
authors
Github user FriederikeHanssen Github user maxulysse
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

gatk4
BSD-3-clause

Genome Analysis Toolkit (GATK4)

gatk.broadinstitute.org/hc/en-us https://github.com/broadinstitute/gatk 10.1158/1538-7445.AM2017-3590