write your description here
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
pileup{:bash}
:file
Pileup files from gatk4/getpileupsummaries
*.pileups.table
dict{:bash}
dictionary
table{:bash}
*.pileups.table{:bash}
pileup summaries table file
versions_gatk4{:bash}
${task.process}{:bash}
:string
The name of the process
gatk4{:bash}
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Genome Analysis Toolkit (GATK4)
