Description
Calls copy-number variants in germline samples given their counts and the output of DetermineGermlineContigPloidy.
Input
Name (Type)
Description
Pattern
Optional - directory containing the model produced by germlinecnvcaller cohort mode
*-cnv-model/*-model
Tools
gatk4
Apache-2.0
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.