modules/gatk4_germlinecnvcaller
Calls copy-number variants in germline samples given their counts and the output of DetermineGermlineContigPloidy.
gatkgermline contig ploidygermlinecnvcaller
Description
Calls copy-number variants in germline samples given their counts and the output of DetermineGermlineContigPloidy.
Tools
gatk4 Apache-2.0
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.