Creates an index for a feature file, e.g. VCF or BED file.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
feature_file{:bash}
:file
VCF/BED file
*.{vcf,vcf.gz,bed,bed.gz}
index{:bash}
*.{tbi,idx}{:bash}
Index for VCF/BED file
*.{tbi,idx}
versions_gatk4{:bash}
${task.process}{:bash}
:string
The name of the process
gatk4{:bash}
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Genome Analysis Toolkit (GATK4)
