Description

Creates an index for a feature file, e.g. VCF or BED file.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

feature_file{:bash}

:file

VCF/BED file

*.{vcf,vcf.gz,bed,bed.gz}

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{tbi,idx}{:bash}

:file

Index for VCF/BED file

*.{tbi,idx}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml