Creates an index for a feature file, e.g. VCF or BED file.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
feature_file
:file
VCF/BED file
*.{vcf,vcf.gz,bed,bed.gz}
index
*.{tbi,idx}
Index for VCF/BED file
versions_gatk4
${task.process}
:string
The name of the process
gatk4
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'
:eval
The expression to obtain the version of the tool
versions
Genome Analysis Toolkit (GATK4)
