modules/gatk4_intervallisttobed

Converts an Picard IntervalList file to a BED file.

bedconversiongatk4interval

https://github.com/nf-core/modules/[...]/modules/nf-core/gatk4/intervallisttobed

Description

Converts an Picard IntervalList file to a BED file.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`intervals:file`

IntervalList file

Output

name:type

description

pattern

`bed`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`${prefix}.bed:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.bed

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

gatk4
BSD-3-clause

Genome Analysis Toolkit (GATK4)

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/categories/360002369672s https://github.com/broadinstitute/gatk 10.1158/1538-7445.AM2017-3590

modules/gatk4_intervallisttobed

Description

Input

meta:map

intervals:file

Output

bed

meta:map

${prefix}.bed:map

versions

versions.yml:file

Tools

gatk4 BSD-3-clause

`meta:map`

`intervals:file`

`bed`

`meta:map`

`${prefix}.bed:map`

`versions`

`versions.yml:file`

gatk4
BSD-3-clause