modules/gatk4_intervallisttobed

Converts an Picard IntervalList file to a BED file.

bedconversiongatk4interval

https://github.com/nf-core/modules/[...]/modules/nf-core/gatk4/intervallisttobed

Description

Converts an Picard IntervalList file to a BED file.

Input

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`interval` (file)

Interval list

*.{interval,interval_list}

Output

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`bed` (file)

BED file

*.bed

`versions` (file)

File containing software versions

versions.yml

Tools

gatk4
BSD-3-clause

Genome Analysis Toolkit (GATK4)

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/categories/360002369672s https://github.com/broadinstitute/gatk 10.1158/1538-7445.AM2017-3590

modules/gatk4_intervallisttobed

Description

Input

`meta` (map)

`interval` (file)

Output

`meta` (map)

`bed` (file)

`versions` (file)

included in

author

get in touch

Tools

gatk4
BSD-3-clause

modules/gatk4_intervallisttobed

Description

Input

meta (map)

interval (file)

Output

meta (map)

bed (file)

versions (file)

included in

author

get in touch

Tools

gatk4 BSD-3-clause

`meta` (map)

`interval` (file)

`meta` (map)

`bed` (file)

`versions` (file)

gatk4
BSD-3-clause