Description

Reverts SAM or BAM files to a previous state.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’]

bam:file

The input bam/sam file

*.{bam,sam}

Output

name:type
description
pattern

bam

meta:file

The reverted bam/sam file

*.reverted.bam

*.bam:file

The reverted bam/sam file

*.reverted.bam

versions

versions.yml:file

File containing software versions

versions.yml

Tools

gatk4
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/categories/360002369672s 10.1158/1538-7445.AM2017-3590
included in
raredisease
maintainer
Github user kevinmenden
get in touch
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