Description

Reverts SAM or BAM files to a previous state.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’]

bam (file)

The input bam/sam file

*.{bam,sam}

Output

Name (Type)
Description
Pattern

bam (file)

The reverted bam/sam file

*.reverted.bam

versions (file)

File containing software versions

versions.yml
included in
raredisease
maintainer
Github user kevinmenden
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

gatk4
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

gatk.broadinstitute.org/hc/en-us gatk.broadinstitute.org/hc/en-us/categories/360002369672s 10.1158/1538-7445.AM2017-3590