Description

Splits CRAM files efficiently by taking advantage of their container based structure

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

cram:file

The CRAM file to split

*.cram

Output

name:type
description
pattern

split_crams

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.cram:file

A list of split CRAM files

*.cram

versions

versions.yml:file

File containing software versions

versions.yml

Tools

gatk4
Apache-2.0

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.