Description

Split intervals into sub-interval files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

interval (file)

Interval list or BED

*.{interval,interval_list,bed}

meta2 (map)

Groovy Map containing reference information
e.g. [ id:‘genome’ ]

fasta (file)

Reference FASTA

*.{fa,fasta}

meta3 (map)

Groovy Map containing reference information
e.g. [ id:‘genome’ ]

fai (file)

Reference FASTA index

*.fai

meta4 (map)

Groovy Map containing reference information
e.g. [ id:‘genome’ ]

dict (file)

Reference sequence dictionary

*.dict

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

bed (file)

A list of scattered interval lists

*.interval_list

versions (file)

File containing software versions

versions.yml
included in
raredisease
maintainers
Github user nvnieuwk
Github user ramprasadn
get in touch
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