Split intervals into sub-interval files.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
intervals{:bash}
:file
Interval file
meta2{:bash}
Groovy Map containing reference information e.g. [ id:‘genome’ ]
fasta{:bash}
Reference FASTA
*.{fa,fasta}
meta3{:bash}
fai{:bash}
Reference FASTA index
*.fai
meta4{:bash}
dict{:bash}
Reference sequence dictionary
*.dict
split_intervals{:bash}
*.interval_list
**.interval_list{:bash}
versions_gatk4{:bash}
${task.process}{:bash}
:string
The name of the process
gatk4{:bash}
The name of the tool
gatk --version | sed -n '/GATK.*v/s/.*v//p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Genome Analysis Toolkit (GATK4)
